rprd1b.S regulation of nuclear pre-mRNA domain containing 1B S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: rprd1b.S
Official Full Name: regulation of nuclear pre-mRNA domain containing 1B S homeolog
Primary source: Xenbase:XB-GENE-949989
Locus tag: XELAEV_18046577mg
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: rprd1a; rprd1bb; rprd1a.S
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Genomic context

Location:: chromosome: 9_10S

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10S	NC_054388.1 (33234701..33266903, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10S	NC_030741.1 (27739129..27771298, complement)

Chromosome 9_10S - NC_054388.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA polymerase II C-terminal domain binding	IEA Inferred from Electronic Annotation more info
enables RNA polymerase II complex binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within mRNA 3'-end processing	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: regulation of nuclear pre-mRNA domain containing 1B S homeolog

Names: regulation of nuclear pre-mRNA domain containing 1A S homeolog; regulation of nuclear pre-mRNA domain containing 1B b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001095451.1 → NP_001088920.1 regulation of nuclear pre-mRNA domain containing 1B S homeolog

See identical proteins and their annotated locations for NP_001088920.1

Status: PROVISIONAL

Source sequence(s)

BC122498

UniProtKB/TrEMBL

A0A974BTB4, Q0D258

Conserved Domains (2) summary

smart00582
Location:8 → 126

RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA

pfam16566
Location:177 → 322

CREPT; Cell-cycle alteration and expression-elevated protein in tumour

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

33234701..33266903 complement

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GenBank, FASTA, Sequence Viewer (Graphics)