U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

dnajc27.S DnaJ heat shock protein family (Hsp40) member C27 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 496237, updated on 3-Jul-2024

Summary

Go to the top of the page Help
Official Symbol
dnajc27.S
Official Full Name
DnaJ heat shock protein family (Hsp40) member C27 S homeolog
Primary source
Xenbase:XB-GENE-490424
Locus tag
XELAEV_18030228mg
See related
EnsemblRapid:ENSXLAG00005005354
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rbj; rap1; rbj1; rbj2; rabjs; rjb-b; dnajc27-a; dnajc27-b
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See dnajc27.S in Genome Data Viewer
Location:
chromosome: 5S
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (139353499..139369889, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (132684913..132701691, complement)

Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene nuclear receptor coactivator 1 S homeolog Neighboring gene adenylate cyclase type 3-like Neighboring gene EFR3 homolog B S homeolog Neighboring gene uncharacterized LOC121394328 Neighboring gene proopiomelanocortin S homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Crystal structure and function of Rbj: A constitutively GTP-bound small G protein with an extra DnaJ domain. Gao Z, et al. Protein Cell, 2019 Oct. PMID 30945136, Free PMC Article
  2. RJLs: a new family of Ras-related GTP-binding proteins. Nepomuceno-Silva JL, et al. Gene, 2004 Mar 3. PMID 14980719
  3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within phagosome-lysosome fusion IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in intracellular organelle IEA
Inferred from Electronic Annotation
more info
  
located_in late endosome IEA
Inferred from Electronic Annotation
more info
  
located_in lysosome IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in phagocytic vesicle IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
dnaJ homolog subfamily C member 27-B
Names
DnaJ (Hsp40) homolog, subfamily C, member 27
RBJ protein 2
Rab and DnaJ domain-containing protein B
rab and DnaJ domain-containing protein 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095422.1 → NP_001088891.1  dnaJ homolog subfamily C member 27-B

    See identical proteins and their annotated locations for NP_001088891.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088700
    UniProtKB/Swiss-Prot
    Q5M7D1, Q6IML2
    UniProtKB/TrEMBL
    A0A974HIH2, A0A974HKY6
    Related
    ENSXLAP00005015785.1, ENSXLAT00005016073.1
    Conserved Domains (3) summary
    cd06257
    Location:220 → 267
    DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...
    cd04119
    Location:17 → 187
    RJL; Rab GTPase family J-like (RabJ-like)
    smart00175
    Location:17 → 180
    RAB; Rab subfamily of small GTPases

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    139353499..139369889 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018264542.2 → XP_018120031.1  dnaJ homolog subfamily C member 27-B isoform X1

    UniProtKB/TrEMBL
    A0A8J0VAP4, A0A974HKY6

  2. XM_018264540.2 → XP_018120029.1  dnaJ homolog subfamily C member 27-B isoform X1

    UniProtKB/TrEMBL
    A0A8J0VAP4, A0A974HKY6

  3. XM_018264541.2 → XP_018120030.1  dnaJ homolog subfamily C member 27-B isoform X1

    UniProtKB/TrEMBL
    A0A8J0VAP4, A0A974HKY6
    Related
    ENSXLAP00005015791.1, ENSXLAT00005016079.1

  4. XM_018264543.2 → XP_018120032.1  dnaJ homolog subfamily C member 27-B isoform X2

    UniProtKB/TrEMBL
    A0A8J0VDJ9, A0A974HKY6
    Related
    ENSXLAP00005015786.1, ENSXLAT00005016074.1

  5. XM_018264544.2 → XP_018120033.1  dnaJ homolog subfamily C member 27-B isoform X3

    UniProtKB/TrEMBL
    A0A8J0VET2, A0A974HKY6
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5M7D1.1 GenPept UniProtKB/Swiss-Prot:Q5M7D1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials