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clvs1.L clavesin 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 496227, updated on 4-Nov-2024

Summary

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Official Symbol
clvs1.L
Official Full Name
clavesin 1 L homeolog
Primary source
Xenbase:XB-GENE-5740452
Locus tag
XELAEV_18032052mg
See related
EnsemblRapid:ENSXLAG00005015873 AllianceGenome:Xenbase:XB-GENE-5740452
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
clvs1; rlbp1l1
Summary
Predicted to enable phosphatidylinositol-3,5-bisphosphate binding activity. Predicted to act upstream of or within lysosome organization. Predicted to be located in clathrin-coated vesicle; endosome; and trans-Golgi network. Orthologous to human CLVS1 (clavesin 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See clvs1.L in Genome Data Viewer
Location:
chromosome: 6L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (125363135..125413597)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (118227636..118278189)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108719267 Neighboring gene chromodomain helicase DNA binding protein 7 L homeolog Neighboring gene small nucleolar RNA U6-53/MBII-28 Neighboring gene aspartate beta-hydroxylase L homeolog Neighboring gene Sodium/potassium transporting ATPase interacting 3 L homeolog Neighboring gene uncharacterized LOC121394731

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphatidylinositol bisphosphate binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphatidylinositol-3,5-bisphosphate binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within lysosome organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lysosome organization ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in clathrin-coated vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in clathrin-coated vesicle ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in early endosome membrane IEA
Inferred from Electronic Annotation
more info
  
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in endosome ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
  
located_in trans-Golgi network ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
clavesin-1
Names
retinaldehyde-binding protein 1-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095414.1 → NP_001088883.1  clavesin-1

    See identical proteins and their annotated locations for NP_001088883.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088689
    UniProtKB/Swiss-Prot
    Q5M7E1
    UniProtKB/TrEMBL
    A0A1L8FZ40, A0A974HGA0
    Related
    ENSXLAP00005046712.1, ENSXLAT00005047816.1
    Conserved Domains (2) summary
    smart01100
    Location:29 → 75
    CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
    pfam00650
    Location:103 → 252
    CRAL_TRIO; CRAL/TRIO domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    125363135..125413597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018266651.2 → XP_018122140.1  clavesin-1 isoform X1

    UniProtKB/Swiss-Prot
    Q5M7E1
    UniProtKB/TrEMBL
    A0A1L8FZ40, A0A974HGA0
    Conserved Domains (2) summary
    smart01100
    Location:29 → 75
    CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
    pfam00650
    Location:103 → 252
    CRAL_TRIO; CRAL/TRIO domain

  2. XM_041565559.1 → XP_041421493.1  clavesin-1 isoform X1

    UniProtKB/Swiss-Prot
    Q5M7E1
    UniProtKB/TrEMBL
    A0A1L8FZ40, A0A974HGA0
    Conserved Domains (2) summary
    smart01100
    Location:29 → 75
    CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
    pfam00650
    Location:103 → 252
    CRAL_TRIO; CRAL/TRIO domain

  3. XM_018266652.2 → XP_018122141.1  clavesin-1 isoform X1

    UniProtKB/Swiss-Prot
    Q5M7E1
    UniProtKB/TrEMBL
    A0A1L8FZ40, A0A974HGA0
    Conserved Domains (2) summary
    smart01100
    Location:29 → 75
    CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
    pfam00650
    Location:103 → 252
    CRAL_TRIO; CRAL/TRIO domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5M7E1.1 GenPept UniProtKB/Swiss-Prot:Q5M7E1

Gene LinkOut

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