nsun4.S NOP2/Sun RNA methyltransferase 4 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: nsun4.S
Official Full Name: NOP2/Sun RNA methyltransferase 4 S homeolog
Primary source: Xenbase:XB-GENE-948194
Locus tag: XELAEV_18025234mg
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: nsun4; nsun4.L
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Genomic context

Location:: chromosome: 4S

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	4S	NC_054378.1 (73317548..73325934)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	4S	NC_030731.1 (67096799..67103945)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	Unplaced Scaffold	NW_016734122.1 (84..391)

Chromosome 4S - NC_054378.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables RNA methyltransferase activity	IEA Inferred from Electronic Annotation more info
enables methyltransferase activity	IEA Inferred from Electronic Annotation more info
enables tRNA (cytidine-5-)-methyltransferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within RNA methylation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within methylation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within rRNA processing	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in mitochondrion	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: 5-methylcytosine rRNA methyltransferase NSUN4

Names: 5-methylcytosine tRNA methyltransferase NSUN4; NOL1/NOP2/Sun domain family member 4; NOP2/Sun RNA methyltransferase family member 4 L homeolog; NOP2/Sun RNA methyltransferase family member 4 S homeolog; NOP2/Sun domain family, member 4; putative methyltransferase NSUN4

NP_001088881.1

EC 2.1.1.-

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001095412.1 → NP_001088881.1 5-methylcytosine rRNA methyltransferase NSUN4

See identical proteins and their annotated locations for NP_001088881.1

Status: PROVISIONAL

Source sequence(s)

BC088687

UniProtKB/Swiss-Prot

Q5M7E3

Conserved Domains (1) summary

cl17173
Location:188 → 347

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...