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lrrc18.L leucine rich repeat containing 18 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 496209, updated on 4-Nov-2024

Summary

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Official Symbol
lrrc18.L
Official Full Name
leucine rich repeat containing 18 L homeolog
Primary source
Xenbase:XB-GENE-993706
Locus tag
XELAEV_18035150mg
See related
EnsemblRapid:ENSXLAG00005027301 AllianceGenome:Xenbase:XB-GENE-993706
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
lrrc18
Summary
Orthologous to human LRRC18 (leucine rich repeat containing 18). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See lrrc18.L in Genome Data Viewer
Location:
chromosome: 7L
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7L NC_054383.1 (65202247..65209282, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7L NC_030736.1 (56747881..56754958, complement)

Chromosome 7L - NC_054383.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase 8 L homeolog Neighboring gene Rho GTPase activating protein 22 L homeolog Neighboring gene WDFY family member 4 L homeolog Neighboring gene V-set and transmembrane domain containing 4 L homeolog Neighboring gene cardiac-enriched FHL2-interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
leucine rich repeat containing 18 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095397.1 → NP_001088866.1  leucine rich repeat containing 18 L homeolog

    See identical proteins and their annotated locations for NP_001088866.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088669
    UniProtKB/TrEMBL
    A0A974CGH6, Q5M7G0
    Related
    ENSXLAP00005081151.1, ENSXLAT00005082759.1
    Conserved Domains (3) summary
    cd00116
    Location:34 → 113
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:30 → 51
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:52 → 108
    LRR_8; Leucine rich repeat

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054383.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    65202247..65209282 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018224602.2 → XP_018080091.1  leucine rich repeat containing 18 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974CGH6, Q5M7G0
    Related
    ENSXLAP00005081186.1, ENSXLAT00005082797.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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