snta1.L syntrophin, alpha 1 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: snta1.L
Official Full Name: syntrophin, alpha 1 L homeolog
Primary source: Xenbase:XB-GENE-962574
Locus tag: XELAEV_18043978mg
See related: EnsemblRapid:ENSXLAG00005023101
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: snta1; snta1.S
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Genomic context

Location:: chromosome: 9_10L

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10L	NC_054387.1 (45165304..45189877, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10L	NC_030740.1 (34844952..34869618, complement)

Chromosome 9_10L - NC_054387.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Ordered disorder of the astrocytic dystrophin-associated protein complex in the norm and pathology.
Title: Ordered disorder of the astrocytic dystrophin-associated protein complex in the norm and pathology.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables structural molecule activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoskeleton	IEA Inferred from Electronic Annotation more info
part_of dystrophin-associated glycoprotein complex	IEA Inferred from Electronic Annotation more info
located_in neuromuscular junction	IEA Inferred from Electronic Annotation more info
located_in sarcolemma	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: syntrophin, alpha 1 L homeolog

Names: syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component); syntrophin, alpha 1 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001095378.1 → NP_001088847.1 syntrophin, alpha 1 L homeolog

See identical proteins and their annotated locations for NP_001088847.1

Status: PROVISIONAL

Source sequence(s)

BC087465

UniProtKB/TrEMBL

A0A974BXX5, Q5M998

Related

ENSXLAP00005068050.1, ENSXLAT00005069584.1

Conserved Domains (4) summary

smart00233
Location:262 → 369

PH; Pleckstrin homology domain

cd00992
Location:68 → 149

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

cd01258
Location:188 → 245

PHsplit_syntrophin; Syntrophin Split Pleckstrin homology (PH) domain

pfam00169
Location:262 → 369

PH; PH domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

45165304..45189877 complement

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GenBank, FASTA, Sequence Viewer (Graphics)