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pgap2.L post-GPI attachment to proteins 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 496149, updated on 4-Nov-2024

Summary

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Official Symbol
pgap2.L
Official Full Name
post-GPI attachment to proteins 2 L homeolog
Primary source
Xenbase:XB-GENE-6252506
Locus tag
XELAEV_18013964mg
See related
EnsemblRapid:ENSXLAG00005028594 AllianceGenome:Xenbase:XB-GENE-6252506
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
frag1; pgap2
Summary
Predicted to act upstream of or within GPI anchor biosynthetic process. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See pgap2.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (180856211..180862035, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (173181786..173183390, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016695891.1 (2202..2537, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016749736.1 (66..321)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene stromal interaction molecule 1 L homeolog Neighboring gene ras homolog family member G L homeolog Neighboring gene TATA-box binding protein associated factor 10 L homeolog Neighboring gene nuclear pore complex protein Nup98-Nup96-like L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within GPI anchor biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
post-GPI attachment to proteins factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095371.1 → NP_001088840.1  post-GPI attachment to proteins factor 2

    See identical proteins and their annotated locations for NP_001088840.1

    Status: PROVISIONAL

    Source sequence(s)
    BC087380
    UniProtKB/Swiss-Prot
    Q5M9A7
    Related
    ENSXLAP00005085135.1, ENSXLAT00005086797.1
    Conserved Domains (1) summary
    pfam10277
    Location:19 → 242
    Frag1; Frag1/DRAM/Sfk1 family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    180856211..180862035 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041581085.1 → XP_041437019.1  post-GPI attachment to proteins factor 2 isoform X1

    UniProtKB/TrEMBL
    A0A8J1M5Q6
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5M9A7.1 GenPept UniProtKB/Swiss-Prot:Q5M9A7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.