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alkbh3.L alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 496071, updated on 18-Sep-2024

Summary

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Official Symbol
alkbh3.L
Official Full Name
alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase L homeolog
Primary source
Xenbase:XB-GENE-5967045
Locus tag
XELAEV_18021810mg
See related
EnsemblRapid:ENSXLAG00005021749
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
alkbh3
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Genomic context

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See alkbh3.L in Genome Data Viewer
Location:
chromosome: 4L
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (6963808..6973123)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (7034176..7042887)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121402898 Neighboring gene hydroxysteroid (17-beta) dehydrogenase 12 L homeolog Neighboring gene uncharacterized LOC108713747 Neighboring gene uncharacterized protein C11orf96 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA alkylation repair IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase L homeolog
Names
alkB, alkylation repair homolog 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095334.1 → NP_001088803.1  alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase L homeolog

    See identical proteins and their annotated locations for NP_001088803.1

    Status: PROVISIONAL

    Source sequence(s)
    BC087485
    UniProtKB/TrEMBL
    A0A974D220, Q5PPV1
    Related
    ENSXLAP00005063875.1, ENSXLAT00005065389.1
    Conserved Domains (1) summary
    cl21496
    Location:82 → 267
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    6963808..6973123
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041589391.1 → XP_041445325.1  alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974D220, Q5PPV1
    Conserved Domains (1) summary
    cl21496
    Location:82 → 267
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  2. XM_018256888.2 → XP_018112377.1  alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974D220, Q5PPV1
    Related
    ENSXLAP00005063888.1, ENSXLAT00005065402.1
    Conserved Domains (1) summary
    cl21496
    Location:82 → 267
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  3. XM_041589392.1 → XP_041445326.1  alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974D220, Q5PPV1
    Conserved Domains (1) summary
    cl21496
    Location:82 → 267
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  4. XM_018256889.2 → XP_018112378.1  alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974D220, Q5PPV1
    Related
    ENSXLAP00005063817.1, ENSXLAT00005065330.1
    Conserved Domains (1) summary
    cl21496
    Location:82 → 267
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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