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btbd2.L BTB domain containing 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 496053, updated on 17-Aug-2024

Summary

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Official Symbol
btbd2.L
Official Full Name
BTB domain containing 2 L homeolog
Primary source
Xenbase:XB-GENE-17334556
Locus tag
XELAEV_18006347mg
See related
EnsemblRapid:ENSXLAG00005021460
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
btbd1
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Genomic context

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Location:
chromosome: 1L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (112300561..112312700)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (100245190..100257369)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121393509 Neighboring gene MAPK interacting serine/threonine kinase 2 L homeolog Neighboring gene casein kinase 1 gamma 2 L homeolog Neighboring gene olfactory receptor 11A1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC496053
Names
BTB domain protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095319.1 → NP_001088788.1  uncharacterized protein LOC496053

    See identical proteins and their annotated locations for NP_001088788.1

    Status: PREDICTED

    Source sequence(s)
    BC087456
    UniProtKB/TrEMBL
    A0A974DZE8, Q5PPX2
    Conserved Domains (4) summary
    smart00225
    Location:102 → 201
    BTB; Broad-Complex, Tramtrack and Bric a brac
    smart00875
    Location:213 → 312
    BACK; BTB And C-terminal Kelch
    pfam00651
    Location:94 → 198
    BTB; BTB/POZ domain
    pfam08005
    Location:360 → 381
    PHR; PHR domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    112300561..112312700
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018249005.2 → XP_018104494.1  uncharacterized protein LOC496053 isoform X3

    UniProtKB/TrEMBL
    A0A8J0UJL7, A0A974DZE8

  2. XM_018248997.2 → XP_018104486.1  uncharacterized protein LOC496053 isoform X2

    UniProtKB/TrEMBL
    A0A8J0UI79, A0A974DZE8
    Related
    ENSXLAP00005063125.1, ENSXLAT00005064575.1

  3. XM_018248989.2 → XP_018104478.1  uncharacterized protein LOC496053 isoform X1

    UniProtKB/TrEMBL
    A0A1L8HWV8, A0A974DZ40
    Related
    ENSXLAP00005063102.1, ENSXLAT00005064550.1
Nucleotide Protein Strain
Heading Accession and Version

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