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bin3.L bridging integrator 3 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 496034, updated on 4-Nov-2024

Summary

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Official Symbol
bin3.L
Official Full Name
bridging integrator 3 L homeolog
Primary source
Xenbase:XB-GENE-999572
Locus tag
XELAEV_18018770mg
See related
EnsemblRapid:ENSXLAG00005003101 AllianceGenome:Xenbase:XB-GENE-999572
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
bin3
Summary
Predicted to enable lipid binding activity. Predicted to act upstream of or within several processes, including actin cortical patch localization; division septum assembly; and plasma membrane tubulation. Predicted to be located in cytoplasm and cytoskeleton. Orthologous to human BIN3 (bridging integrator 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See bin3.L in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (138421087..138449240, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (122864195..122892385, complement)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene PDZ and LIM domain 2 (mystique) L homeolog Neighboring gene uncharacterized LOC108711622 Neighboring gene uncharacterized LOC121401587 Neighboring gene early growth response 3 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within actin cortical patch localization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cell division IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within division septum assembly IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within endocytosis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within plasma membrane tubulation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
bridging integrator 3 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095301.1 → NP_001088770.1  bridging integrator 3 homolog

    See identical proteins and their annotated locations for NP_001088770.1

    Status: PROVISIONAL

    Source sequence(s)
    BC087428
    UniProtKB/Swiss-Prot
    Q5PPZ5
    UniProtKB/TrEMBL
    A0A974HTV9
    Related
    ENSXLAP00005009253.1, ENSXLAT00005009392.1
    Conserved Domains (1) summary
    cd07590
    Location:11 → 235
    BAR_Bin3; The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    138421087..138449240 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5PPZ5.1 GenPept UniProtKB/Swiss-Prot:Q5PPZ5

Gene LinkOut

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