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laptm4a.L lysosomal-associated protein transmembrane 4 alpha L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 496032, updated on 4-Nov-2024

Summary

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Official Symbol
laptm4a.L
Official Full Name
lysosomal-associated protein transmembrane 4 alpha L homeolog
Primary source
Xenbase:XB-GENE-1001944
Locus tag
XELAEV_18028096mg
See related
EnsemblRapid:ENSXLAG00005007703 AllianceGenome:Xenbase:XB-GENE-1001944
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
mbnt; mtrp; laptm4; laptm4a; laptm4aa; laptm4a-a; laptm4a-b
Summary
Predicted to be located in lysosomal membrane. Orthologous to human LAPTM4A (lysosomal protein transmembrane 4 alpha). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See laptm4a.L in Genome Data Viewer
Location:
chromosome: 5L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (154405749..154433198, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (143339475..143367915, complement)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 32 L homeolog Neighboring gene matrilin 3 L homeolog Neighboring gene syndecan 1 L homeolog Neighboring gene pumilio RNA binding family member 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
lysosomal-associated protein transmembrane 4 alpha L homeolog
Names
lysosomal protein transmembrane 4 alpha a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095299.1 → NP_001088768.1  lysosomal-associated protein transmembrane 4 alpha L homeolog

    See identical proteins and their annotated locations for NP_001088768.1

    Status: PROVISIONAL

    Source sequence(s)
    BC087426
    UniProtKB/TrEMBL
    A0A974CUI7, A0A974CWI2, Q5PPZ7
    Related
    ENSXLAP00005021946.1, ENSXLAT00005022637.1
    Conserved Domains (1) summary
    cl04276
    Location:9 → 217
    Mtp; Golgi 4-transmembrane spanning transporter

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    154405749..154433198 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018262050.2 → XP_018117539.1  lysosomal-associated protein transmembrane 4 alpha L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974CUI7, A0A974CWI2, Q5PPZ7
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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