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tuba1l.S tubulin alpha 1 like S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 496021, updated on 4-Nov-2024

Summary

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Official Symbol
tuba1l.S
Official Full Name
tubulin alpha 1 like S homeolog
Primary source
Xenbase:XB-GENE-5845607
Locus tag
XELAEV_18047001mg
See related
EnsemblRapid:ENSXLAG00005012806 AllianceGenome:Xenbase:XB-GENE-5845607
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
tubal3; tubal3.S
Summary
Predicted to enable GTP binding activity and hydrolase activity. Predicted to be a structural constituent of cytoskeleton. Predicted to act upstream of or within microtubule cytoskeleton organization and mitotic cell cycle. Predicted to be located in cytoplasm and microtubule. Orthologous to human TUBAL3 (tubulin alpha like 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See tuba1l.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (52815204..52820088, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (46163153..46168890, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108702916 Neighboring gene alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase S homeolog Neighboring gene transmembrane protein 163 S homeolog Neighboring gene aminocarboxymuconate semialdehyde decarboxylase S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within microtubule-based process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tubulin alpha 1 like S homeolog
Names
tubulin alpha like 3 S homeolog
tubulin, alpha-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095288.1 → NP_001088757.1  tubulin alpha 1 like S homeolog

    See identical proteins and their annotated locations for NP_001088757.1

    Status: PROVISIONAL

    Source sequence(s)
    BC087414
    UniProtKB/TrEMBL
    A0A974BYQ5, Q5PQ08
    Conserved Domains (1) summary
    PTZ00335
    Location:1 → 441
    PTZ00335; tubulin alpha chain; Provisional

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    52815204..52820088 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041577842.1 → XP_041433776.1  tubulin alpha 1 like S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LXK7, A0A974BYQ5
    Related
    ENSXLAP00005037679.1, ENSXLAT00005038590.1
    Conserved Domains (1) summary
    PTZ00335
    Location:8 → 449
    PTZ00335; tubulin alpha chain; Provisional
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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