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lysmd1.S LysM, putative peptidoglycan-binding, domain containing 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495999, updated on 17-Aug-2024

Summary

Official Symbol
lysmd1.S
Official Full Name
LysM, putative peptidoglycan-binding, domain containing 1 S homeolog
Primary source
Xenbase:XB-GENE-989801
Locus tag
XELAEV_18042811mg
See related
EnsemblRapid:ENSXLAG00005023840
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
lysmd1
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Genomic context

See lysmd1.S in Genome Data Viewer
Location:
chromosome: 8S
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (99732945..99738231, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (94702753..94708038, complement)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121397578 Neighboring gene TNF alpha induced protein 8 like 2 S homeolog Neighboring gene tropomodulin 4 S homeolog Neighboring gene vacuolar protein sorting 72 homolog S homeolog

Genomic regions, transcripts, and products

General protein information

Preferred Names
lysM and putative peptidoglycan-binding domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095266.1NP_001088735.1  lysM and putative peptidoglycan-binding domain-containing protein 1

    See identical proteins and their annotated locations for NP_001088735.1

    Status: PROVISIONAL

    Source sequence(s)
    BC087389
    UniProtKB/Swiss-Prot
    Q5PQ30
    UniProtKB/TrEMBL
    A0A974H6Q8
    Related
    ENSXLAP00005070598.1, ENSXLAT00005072139.1
    Conserved Domains (2) summary
    cd00118
    Location:3981
    LysM; Lysine Motif is a small domain involved in binding peptidoglycan
    COG1388
    Location:3986
    LysM; LysM repeat [Cell wall/membrane/envelope biogenesis]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    99732945..99738231 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)