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alkbh6.L alkB homolog 6 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495973, updated on 4-Nov-2024

Summary

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Official Symbol
alkbh6.L
Official Full Name
alkB homolog 6 L homeolog
Primary source
Xenbase:XB-GENE-5891959
Locus tag
XELAEV_18039381mg
See related
EnsemblRapid:ENSXLAG00005027356 AllianceGenome:Xenbase:XB-GENE-5891959
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
alkbh6
Summary
Predicted to enable dioxygenase activity and metal ion binding activity. Predicted to be located in cytoplasm and nucleus. Orthologous to human ALKBH6 (alkB homolog 6). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See alkbh6.L in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (71798945..71805864)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (58310533..58317456)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3 subunit K L homeolog Neighboring gene CAP-Gly domain containing linker protein 3 L homeolog Neighboring gene uncharacterized LOC108698646 Neighboring gene lectin, galactoside-binding, soluble, 4, gene 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
alpha-ketoglutarate-dependent dioxygenase alkB homolog 6
Names
Alkylated DNA repair protein alkB homolog 6
alkB, alkylation repair homolog 6
probable alpha-ketoglutarate-dependent dioxygenase ABH6
NP_001088709.1
XP_018084621.1
XP_018084622.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095240.1 → NP_001088709.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 6

    See identical proteins and their annotated locations for NP_001088709.1

    Status: PROVISIONAL

    Source sequence(s)
    BC087349
    UniProtKB/Swiss-Prot
    Q5PQ59
    UniProtKB/TrEMBL
    A0A974C8S8
    Related
    ENSXLAP00005081305.1, ENSXLAT00005082916.1
    Conserved Domains (1) summary
    cl21496
    Location:60 → 224
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    71798945..71805864
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018229132.2 → XP_018084621.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1

    UniProtKB/Swiss-Prot
    Q5PQ59
    UniProtKB/TrEMBL
    A0A974C8S8

  2. XM_018229133.2 → XP_018084622.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X2

    UniProtKB/TrEMBL
    A0A8J0TIP8
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5PQ59.1 GenPept UniProtKB/Swiss-Prot:Q5PQ59

Gene LinkOut

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