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gpd2.L glycerol-3-phosphate dehydrogenase 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495948, updated on 4-Nov-2024

Summary

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Official Symbol
gpd2.L
Official Full Name
glycerol-3-phosphate dehydrogenase 2 L homeolog
Primary source
Xenbase:XB-GENE-17339243
Locus tag
XELAEV_18044586mg
See related
EnsemblRapid:ENSXLAG00005026612 AllianceGenome:Xenbase:XB-GENE-17339243
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable calcium ion binding activity and glycerol-3-phosphate dehydrogenase (quinone) activity. Predicted to act upstream of or within glycerol-3-phosphate metabolic process. Predicted to be located in mitochondrion. Predicted to be part of glycerol-3-phosphate dehydrogenase (FAD) complex. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human GPD2 (glycerol-3-phosphate dehydrogenase 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See gpd2.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (69993386..70111104)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (59480278..59553830)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene polypeptide N-acetylgalactosaminyltransferase 5 L homeolog Neighboring gene uncharacterized LOC121398167

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables glycerol-3-phosphate dehydrogenase (quinone) activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within glycerol-3-phosphate metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within organophosphate metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within phosphate-containing compound metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of glycerol-3-phosphate dehydrogenase (FAD) complex IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC495948

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095215.1 → NP_001088684.1  uncharacterized protein LOC495948

    See identical proteins and their annotated locations for NP_001088684.1

    Status: PREDICTED

    Source sequence(s)
    BC087317
    UniProtKB/TrEMBL
    Q5PQ87
    Related
    ENSXLAP00005079234.1, ENSXLAT00005080825.1
    Conserved Domains (1) summary
    PLN02464
    Location:1 → 216
    PLN02464; glycerol-3-phosphate dehydrogenase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    69993386..70111104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041575721.1 → XP_041431655.1  uncharacterized protein LOC495948 isoform X1

    UniProtKB/TrEMBL
    A0A8J1LSE8
    Related
    ENSXLAP00005080530.1, ENSXLAT00005082123.1
    Conserved Domains (2) summary
    cd00051
    Location:628 → 687
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cl40741
    Location:1 → 597
    DAO; FAD dependent oxidoreductase

  2. XM_018234553.2 → XP_018090042.1  uncharacterized protein LOC495948 isoform X2

    UniProtKB/TrEMBL
    A0A1L8EVW2, A0A974BZ30
    Related
    ENSXLAP00005080392.1, ENSXLAT00005081985.1
Nucleotide Protein Strain
Heading Accession and Version

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