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tubg1.S tubulin gamma 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495938, updated on 4-Nov-2024

Summary

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Official Symbol
tubg1.S
Official Full Name
tubulin gamma 1 S homeolog
Primary source
Xenbase:XB-GENE-17335102
Locus tag
XELAEV_18046374mg
See related
EnsemblRapid:ENSXLAG00005029426 AllianceGenome:Xenbase:XB-GENE-17335102
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
Xgam
Summary
Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to act upstream of or within microtubule cytoskeleton organization and mitotic sister chromatid segregation. Predicted to be located in cytoplasm; microtubule cytoskeleton; and nucleus. Predicted to be part of gamma-tubulin complex. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations 4; inclusion body myositis; and muscular disease. Orthologous to human TUBG1 (tubulin gamma 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See tubg1.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (17890838..17919480)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (17173512..17202492)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108702687 Neighboring gene serine/threonine-protein kinase 3/4-like Neighboring gene reticulophagy regulator family member 3 S homeolog Neighboring gene baculoviral IAP repeat containing 5 like S homeolog Neighboring gene suppressor of cytokine signaling 3 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cytoplasmic microtubule organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within meiotic spindle organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within microtubule nucleation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mitotic sister chromatid segregation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mitotic spindle organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
part_of gamma-tubulin complex IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in spindle IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Tubulin gamma-1 chain-like
Names
gamma-tubulin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095207.1 → NP_001088676.1  Tubulin gamma-1 chain-like

    See identical proteins and their annotated locations for NP_001088676.1

    Status: PROVISIONAL

    Source sequence(s)
    BC087300
    UniProtKB/Swiss-Prot
    P23330
    UniProtKB/TrEMBL
    A0A974BTD5, Q5PQ98
    Related
    ENSXLAP00005087922.1, ENSXLAT00005089584.1
    Conserved Domains (2) summary
    PLN00222
    Location:1 → 451
    PLN00222; tubulin gamma chain; Provisional
    cd02188
    Location:3 → 435
    gamma_tubulin; The gamma-tubulin family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    17890838..17919480
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials