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gde1.L glycerophosphodiester phosphodiesterase 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495935, updated on 18-Sep-2024

Summary

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Official Symbol
gde1.L
Official Full Name
glycerophosphodiester phosphodiesterase 1 L homeolog
Primary source
Xenbase:XB-GENE-976299
Locus tag
XELAEV_18045212mg
See related
EnsemblRapid:ENSXLAG00005014354
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
gde1
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Genomic context

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See gde1.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (103736050..103764673, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (93172703..93201720, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene transmembrane channel like 7 L homeolog Neighboring gene transmembrane channel like 5 L homeolog Neighboring gene centriolar coiled-coil protein 110kDa L homeolog Neighboring gene VPS35 endosomal protein sorting factor like L homeolog Neighboring gene VPS35 endosomal protein-sorting factor-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables glycerophosphodiester phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
  
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within N-acylethanolamine metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ethanolamine metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within phospholipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
glycerophosphodiester phosphodiesterase 1 L homeolog
NP_001088673.1
XP_018090041.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095204.1 → NP_001088673.1  glycerophosphodiester phosphodiesterase 1 L homeolog

    See identical proteins and their annotated locations for NP_001088673.1

    Status: PROVISIONAL

    Source sequence(s)
    BC087297
    UniProtKB/TrEMBL
    A0A974C0X5, Q5PQA1
    Related
    ENSXLAP00005042011.1, ENSXLAT00005043065.1
    Conserved Domains (2) summary
    cd08573
    Location:65 → 320
    GDPD_GDE1; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins
    pfam03009
    Location:67 → 318
    GDPD; Glycerophosphoryl diester phosphodiesterase family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    103736050..103764673 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018234552.2 → XP_018090041.1  glycerophosphodiester phosphodiesterase 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0TJU9, A0A974C0X5
    Related
    ENSXLAP00005042031.1, ENSXLAT00005043097.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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