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nherf1.L NHERF family PDZ scaffold protein 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495828, updated on 18-Sep-2024

Summary

Official Symbol
nherf1.L
Official Full Name
NHERF family PDZ scaffold protein 1 L homeolog
Primary source
Xenbase:XB-GENE-17341728
Locus tag
XELAEV_18044026mg
See related
EnsemblRapid:ENSXLAG00005029425
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
nherf; nherf1; nherf-1; slc9a3r1; slc9a3r1.L
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Genomic context

See nherf1.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (46377322..46390736)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (36055426..36068884)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene protein HEATR9-like Neighboring gene RAB37, member RAS oncogene family L homeolog Neighboring gene polycystin-1 Neighboring gene N-acetyltransferase 9 L homeolog Neighboring gene transmembrane protein 104 L homeolog

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 
enables protein-membrane adaptor activity IEA
Inferred from Electronic Annotation
more info
 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 
located_in filopodium IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in microvillus IEA
Inferred from Electronic Annotation
more info
 
located_in ruffle IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein LOC495828
Names
SLC9A3 regulator 1 L homeolog
solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095186.1NP_001088655.1  uncharacterized protein LOC495828

    See identical proteins and their annotated locations for NP_001088655.1

    Status: PREDICTED

    Source sequence(s)
    BC086464
    UniProtKB/TrEMBL
    A0A974BTT3, A0A974BY21, A8E609, Q5RJX5
    Related
    ENSXLAP00005087898.1, ENSXLAT00005089560.1
    Conserved Domains (2) summary
    cd00992
    Location:483
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09007
    Location:200316
    EBP50_C; EBP50, C-terminal

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    46377322..46390736
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018234550.2XP_018090039.1  uncharacterized protein LOC495828 isoform X1

    UniProtKB/TrEMBL
    A0A8J0TRN0, A0A974BTT3, A8E609