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ubox5.S U-box domain containing 5 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495687, updated on 18-Sep-2024

Summary

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Official Symbol
ubox5.S
Official Full Name
U-box domain containing 5 S homeolog
Primary source
Xenbase:XB-GENE-973076
Locus tag
XELAEV_18008801mg
See related
EnsemblRapid:ENSXLAG00005000779
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ubox5
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Genomic context

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See ubox5.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (6453219..6468843)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (6334259..6349450)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 127 Neighboring gene leucine zipper, putative tumor suppressor family member 3 S homeolog Neighboring gene FAST kinase domain-containing protein 5, mitochondrial-like Neighboring gene arginine vasopressin S homeolog Neighboring gene oxytocin/neurophysin I prepropeptide S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin-ubiquitin ligase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
U-box domain containing 5 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095166.1 → NP_001088635.1  U-box domain containing 5 S homeolog

    See identical proteins and their annotated locations for NP_001088635.1

    Status: PROVISIONAL

    Source sequence(s)
    BC086279
    UniProtKB/TrEMBL
    Q5U251
    Related
    ENSXLAP00005002291.1, ENSXLAT00005002337.1
    Conserved Domains (2) summary
    pfam14634
    Location:482 → 518
    zf-RING_5; zinc-RING finger domain
    cl17238
    Location:257 → 334
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    6453219..6468843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041576246.1 → XP_041432180.1  U-box domain containing 5 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8HKJ7, A0A974DSC6
    Conserved Domains (2) summary
    cd16537
    Location:481 → 527
    RING-HC_RNF37; RING finger, HC subclass, found in RING finger protein 37 (RNF37)
    cd16660
    Location:258 → 310
    RING-Ubox_RNF37; U-box domain, a modified RING finger, found in RING finger protein 37 (RNF37)
Nucleotide Protein Strain
Heading Accession and Version

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