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pcmt1.L protein-L-isoaspartate (D-aspartate) O-methyltransferase L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495685, updated on 4-Nov-2024

Summary

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Official Symbol
pcmt1.L
Official Full Name
protein-L-isoaspartate (D-aspartate) O-methyltransferase L homeolog
Primary source
Xenbase:XB-GENE-959022
Locus tag
XELAEV_18027049mg
See related
EnsemblRapid:ENSXLAG00005020392 AllianceGenome:Xenbase:XB-GENE-959022
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pcmt1
Summary
Predicted to enable protein-L-isoaspartate (D-aspartate) O-methyltransferase activity. Predicted to act upstream of or within methylation and protein modification process. Predicted to be located in cytosol. Orthologous to human PCMT1 (protein-L-isoaspartate (D-aspartate) O-methyltransferase). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See pcmt1.L in Genome Data Viewer
Location:
chromosome: 5L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (65688218..65739210)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (68923470..68974647, complement)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121393689 Neighboring gene paraneoplastic antigen Ma1 homolog Neighboring gene low-density lipoprotein receptor-related protein 11 Neighboring gene dynein light chain Tctex-type 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein-L-isoaspartate (D-aspartate) O-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within methylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein modification process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein-L-isoaspartate (D-aspartate) O-methyltransferase L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095164.1 → NP_001088633.1  protein-L-isoaspartate (D-aspartate) O-methyltransferase L homeolog

    See identical proteins and their annotated locations for NP_001088633.1

    Status: PROVISIONAL

    Source sequence(s)
    BC086277
    UniProtKB/TrEMBL
    Q5U253
    Conserved Domains (2) summary
    pfam01135
    Location:8 → 216
    PCMT; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    cl17173
    Location:13 → 218
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    65688218..65739210
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018262043.2 → XP_018117532.1  protein-L-isoaspartate (D-aspartate) O-methyltransferase L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0V9X5, A0A974HJA7
    Related
    ENSXLAP00005059728.1, ENSXLAT00005061177.1

  2. XM_041562268.1 → XP_041418202.1  protein-L-isoaspartate (D-aspartate) O-methyltransferase L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1KLJ9, A0A974HJA7
    Related
    ENSXLAP00005059722.1, ENSXLAT00005061171.1
    Conserved Domains (1) summary
    TIGR00080
    Location:78 → 297
    pimt; protein-L-isoaspartate(D-aspartate) O-methyltransferase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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