ifit1b.L interferon induced protein with tetratricopeptide repeats 1B L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: ifit1b.L
Official Full Name: interferon induced protein with tetratricopeptide repeats 1B L homeolog
Primary source: Xenbase:XB-GENE-5999508
Locus tag: XELAEV_18034749mg
See related: EnsemblRapid:ENSXLAG00005035921
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: ifit1b; ifit1l
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Genomic context

Location:: chromosome: 7L

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	7L	NC_054383.1 (32529007..32535206)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	7L	NC_030736.1 (31005562..31011691)

Chromosome 7L - NC_054383.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within defense response to virus	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within response to other organism	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytosol	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: interferon induced protein with tetratricopeptide repeats 1B L homeolog

Names: interferon-induced protein with tetratricopeptide repeats 1B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001095147.1 → NP_001088616.1 interferon induced protein with tetratricopeptide repeats 1B L homeolog

See identical proteins and their annotated locations for NP_001088616.1

Status: PROVISIONAL

Source sequence(s)

BC085211

UniProtKB/TrEMBL

Q5U496

Conserved Domains (3) summary

sd00006
Location:244 → 274

TPR; TPR repeat [structural motif]

pfam13424
Location:51 → 125

TPR_12; Tetratricopeptide repeat

pfam13428
Location:247 → 286

TPR_14; Tetratricopeptide repeat

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054383.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

32529007..32535206

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041568555.1 → XP_041424489.1 interferon induced protein with tetratricopeptide repeats 1B L homeolog isoform X1

UniProtKB/TrEMBL

A0A1L8FJN6, A0A974CGP1

Related

ENSXLAP00005107388.1, ENSXLAT00005109515.1

Conserved Domains (2) summary

TIGR02917
Location:141 → 462

PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein

sd00006
Location:245 → 273

TPR; TPR repeat [structural motif]