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plod3.S procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495489, updated on 17-Aug-2024

Summary

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Official Symbol
plod3.S
Official Full Name
procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 S homeolog
Primary source
Xenbase:XB-GENE-17339835
Locus tag
XELAEV_18001011mg
See related
EnsemblRapid:ENSXLAG00005009204
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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See plod3.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (130212509..130229725)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694811.1 (6498536..6544001)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 1444-like Neighboring gene zinc finger, HIT-type containing 1 S homeolog Neighboring gene Rho guanine nucleotide exchange factor 15 S homeolog Neighboring gene uncharacterized LOC108703565

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC495489

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095132.1 → NP_001088601.1  uncharacterized protein LOC495489 precursor

    See identical proteins and their annotated locations for NP_001088601.1

    Status: PREDICTED

    Source sequence(s)
    BC085074
    UniProtKB/TrEMBL
    A0A974DHF3, Q5U4J1
    Related
    ENSXLAP00005026956.1, ENSXLAT00005027688.1
    Conserved Domains (1) summary
    smart00702
    Location:568 → 727
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    130212509..130229725
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041587702.1 → XP_041443636.1  uncharacterized protein LOC495489 isoform X1

    UniProtKB/TrEMBL
    A0A8J1MQC6, A0A974DHF3
    Related
    ENSXLAP00005027044.1, ENSXLAT00005027776.1
Nucleotide Protein Strain
Heading Accession and Version

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