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thg1l.L tRNA-histidine guanylyltransferase 1-like L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495483, updated on 17-Aug-2024

Summary

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Official Symbol
thg1l.L
Official Full Name
tRNA-histidine guanylyltransferase 1-like L homeolog
Primary source
Xenbase:XB-GENE-966763
Locus tag
XELAEV_18016888mg
See related
EnsemblRapid:ENSXLAG00005022505
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
thg1l; thg1l.S
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Genomic context

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Location:
chromosome: 3L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (19576792..19592384)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (11848766..11864313, complement)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene estradiol 17-beta-dehydrogenase 1 Neighboring gene S-phase kinase-associated protein 1 L homeolog Neighboring gene tetraspanin 9 L homeolog Neighboring gene lactate dehydrogenase B L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Expression analysis of thg1l during Xenopus laevis development.
    Title: Expression analysis of thg1l during Xenopus laevis development.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleotidyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables tRNA guanylyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within tRNA modification IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within tRNA processing IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tRNA-histidine guanylyltransferase 1-like L homeolog
Names
tRNA-histidine guanylyltransferase 1-like S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095128.1 → NP_001088597.1  tRNA-histidine guanylyltransferase 1-like L homeolog

    See identical proteins and their annotated locations for NP_001088597.1

    Status: PROVISIONAL

    Source sequence(s)
    BC085067
    UniProtKB/TrEMBL
    A0A974DBF3, Q5U4J8
    Related
    ENSXLAP00005066157.1, ENSXLAT00005067681.1
    Conserved Domains (3) summary
    COG4021
    Location:2 → 279
    Thg1; tRNA(His) 5'-end guanylyltransferase [Translation, ribosomal structure and biogenesis]
    pfam04446
    Location:9 → 152
    Thg1; tRNAHis guanylyltransferase
    pfam14413
    Location:155 → 270
    Thg1C; Thg1 C terminal domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    19576792..19592384
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041585200.1 → XP_041441134.1  tRNA-histidine guanylyltransferase 1-like L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1MHD6
    Related
    ENSXLAP00005066174.1, ENSXLAT00005067696.1
    Conserved Domains (1) summary
    COG4021
    Location:69 → 346
    Thg1; tRNA(His) 5'-end guanylyltransferase [Translation, ribosomal structure and biogenesis]

  2. XM_018251143.2 → XP_018106632.1  tRNA-histidine guanylyltransferase 1-like L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A1L8GWS9, A0A974DC53
    Related
    ENSXLAP00005066191.1, ENSXLAT00005067715.1

  3. XM_041585201.1 → XP_041441135.1  tRNA-histidine guanylyltransferase 1-like L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1MJB6
    Conserved Domains (1) summary
    COG4021
    Location:27 → 287
    Thg1; tRNA(His) 5'-end guanylyltransferase [Translation, ribosomal structure and biogenesis]

  4. XM_041585202.1 → XP_041441136.1  tRNA-histidine guanylyltransferase 1-like L homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J1MIC7
    Conserved Domains (1) summary
    COG4021
    Location:1 → 209
    Thg1; tRNA(His) 5'-end guanylyltransferase [Translation, ribosomal structure and biogenesis]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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