cd93.S CD93 molecule S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: cd93.S
Official Full Name: CD93 molecule S homeolog
Primary source: Xenbase:XB-GENE-978138
Locus tag: XELAEV_18028800mg
See related: EnsemblRapid:ENSXLAG00005030691 AllianceGenome:Xenbase:XB-GENE-978138
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: AA4; c1qr; cd93; c1qr1; c1qrp; cdw93; ecsm3; mxra4; c1qr(p)
Summary: Predicted to enable calcium ion binding activity; extracellular matrix binding activity; and extracellular matrix protein binding activity. Predicted to act upstream of or within cell migration. Predicted to be located in external side of plasma membrane and extracellular matrix. Is expressed in several structures, including cardiovascular system; ectoderm; mesenchyme; pharyngeal arch; and respiratory system. Orthologous to human CD93 (CD93 molecule). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 5S

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	5S	NC_054380.1 (25654123..25657541, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	5S	NC_030733.1 (25731118..25734536, complement)

Chromosome 5S - NC_054380.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info
enables extracellular matrix binding	IEA Inferred from Electronic Annotation more info
enables extracellular matrix protein binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell migration	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in external side of plasma membrane	IEA Inferred from Electronic Annotation more info
located_in extracellular matrix	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: CD93 molecule S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001095115.1 → NP_001088584.2 CD93 molecule S homeolog precursor

Status: PROVISIONAL

Source sequence(s)

BC111511

UniProtKB/TrEMBL

A0A8J0Q1S1, A0A974CS47

Related

ENSXLAP00005091823.1, ENSXLAT00005093503.1

Conserved Domains (4) summary

cd03600
Location:31 → 173

CLECT_thrombomodulin_like; C-type lectin-like domain (CTLD) of the type found in human thrombomodulin(TM), Endosialin, C14orf27, and C1qR

smart00179
Location:375 → 408

EGF_CA; Calcium-binding EGF-like domain

pfam12662
Location:318 → 341

cEGF; Complement Clr-like EGF-like

pfam14670
Location:259 → 297

FXa_inhibition; Coagulation Factor Xa inhibitory site

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

25654123..25657541 complement

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GenBank, FASTA, Sequence Viewer (Graphics)