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slc25a20.S solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495458, updated on 4-Nov-2024

Summary

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Official Symbol
slc25a20.S
Official Full Name
solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 S homeolog
Primary source
Xenbase:XB-GENE-971457
Locus tag
XELAEV_18025924mg
See related
EnsemblRapid:ENSXLAG00005021303 AllianceGenome:Xenbase:XB-GENE-971457
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
cac; cact; dif-1; slc25a20.2; slc25a20.2.S
Summary
Predicted to enable acyl carnitine transmembrane transporter activity. Predicted to act upstream of or within carnitine transmembrane transport and mitochondrial transport. Predicted to be located in membrane and mitochondrial envelope. Human ortholog(s) of this gene implicated in carnitine-acylcarnitine translocase deficiency. Orthologous to human SLC25A20 (solute carrier family 25 member 20). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See slc25a20.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (115799088..115825538, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (109384529..109410958, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene protein kinase, cAMP-dependent, regulatory subunit type II alpha S homeolog Neighboring gene uncharacterized LOC108715883 Neighboring gene sorting nexin-30-like Neighboring gene prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum) S homeolog Neighboring gene frizzled related protein 2 S homeolog Neighboring gene ariadne RBR E3 ubiquitin protein ligase 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene expression screening in Xenopus identifies molecular pathways, predicts gene function and provides a global view of embryonic patterning. Gawantka V, et al. Mech Dev, 1998 Oct. PMID 9831640
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables acyl carnitine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within carnitine transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mitochondrial transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrial envelope IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
mitochondrial carnitine/acylcarnitine carrier protein; solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 S homeolog
Names
solute carrier family 25 (carnitine/acylcarnitine translocase), member 20, gene 2 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    115799088..115825538 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041561742.1 → XP_041417676.1  mitochondrial carnitine/acylcarnitine carrier protein

    UniProtKB/TrEMBL
    A0A974D2X5, Q5U4N6
    Related
    ENSXLAP00005062513.1, ENSXLAT00005063968.1
    Conserved Domains (1) summary
    pfam00153
    Location:106 → 198
    Mito_carr; Mitochondrial carrier protein

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001095111.1: Suppressed sequence

    Description
    NM_001095111.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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