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LOC495407 uncharacterized LOC495407 [ Xenopus laevis (African clawed frog) ]

Gene ID: 495407, updated on 18-Aug-2023

Summary

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Gene symbol
LOC495407
Gene description
uncharacterized LOC495407
Locus tag
XELAEV_18028287mg
See related
EnsemblRapid:ENSXLAG00005023893
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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Location:
chromosome: 5L
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (165587211..165661462)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (154564075..154638271)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108717256 Neighboring gene epoxide hydrolase 2, cytoplasmic L homeolog Neighboring gene uncharacterized LOC108716390 Neighboring gene uncharacterized LOC121393863

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gulo Acts as a de novo Marker for Pronephric Tubules in Xenopus laevis. Xie Y, et al. Kidney Blood Press Res, 2016. PMID 27832650
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC495407

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095065.1 → NP_001088534.1  uncharacterized protein LOC495407

    See identical proteins and their annotated locations for NP_001088534.1

    Status: PREDICTED

    Source sequence(s)
    BC084892
    UniProtKB/TrEMBL
    A0A974HKF0, Q5U4Z7
    Related
    ENSXLAP00005070894.1, ENSXLAT00005072441.1
    Conserved Domains (3) summary
    TIGR01678
    Location:7 → 432
    FAD_lactone_ox; sugar 1,4-lactone oxidases
    pfam01565
    Location:21 → 156
    FAD_binding_4; FAD binding domain
    pfam04030
    Location:180 → 438
    ALO; D-arabinono-1,4-lactone oxidase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    165587211..165661462
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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