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ODCP ornithine decarboxylase pseudogene [ Homo sapiens (human) ]

Gene ID: 4954, updated on 17-Sep-2024

Summary

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Official Symbol
ODCPprovided by HGNC
Official Full Name
ornithine decarboxylase pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:8110
See related
AllianceGenome:HGNC:8110
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ODC2
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Genomic context

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See ODCP in Genome Data Viewer
Location:
7q32.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (129028582..129030945)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (130341447..130343810)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (128668636..128670999)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:128578271-128578854 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26611 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26612 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26613 Neighboring gene interferon regulatory factor 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26614 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26615 Neighboring gene transportin 3 Neighboring gene RNA, 7SL, cytoplasmic 306, pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr7:128622104-128622662 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_97543 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:128669474-128669974 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26616 Neighboring gene Sharpr-MPRA regulatory region 4017 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_97561 Neighboring gene small nucleolar RNA U13 Neighboring gene triosephosphate isomerase 1 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_027864.3 

    Range
    37..2400
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    129028582..129030945
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    130341447..130343810
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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