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tspan13.S tetraspanin 13 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495385, updated on 4-Nov-2024

Summary

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Official Symbol
tspan13.S
Official Full Name
tetraspanin 13 S homeolog
Primary source
Xenbase:XB-GENE-17344751
Locus tag
XELAEV_18033018mg
See related
EnsemblRapid:ENSXLAG00005023760 AllianceGenome:Xenbase:XB-GENE-17344751
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to be located in membrane. Orthologous to human TSPAN13 (tetraspanin 13). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See tspan13.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (30027657..30055425)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (29496716..29524742)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and MYND domain containing 2 S homeolog Neighboring gene uncharacterized LOC121395017 Neighboring gene anterior gradient 2, protein disulphide isomerase family member S homeolog Neighboring gene aryl hydrocarbon receptor S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC495385

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095046.1 → NP_001088515.1  uncharacterized protein LOC495385

    See identical proteins and their annotated locations for NP_001088515.1

    Status: PREDICTED

    Source sequence(s)
    BC084853
    UniProtKB/TrEMBL
    A0A974CK08, A0A974CMH8, Q5U531
    Related
    ENSXLAP00005070376.1, ENSXLAT00005071916.1
    Conserved Domains (1) summary
    pfam00335
    Location:8 → 181
    Tetraspannin; Tetraspanin family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    30027657..30055425
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Research Materials