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pelo.L pelota homolog L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495353, updated on 17-Aug-2024

Summary

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Official Symbol
pelo.L
Official Full Name
pelota homolog L homeolog
Primary source
Xenbase:XB-GENE-5901616
Locus tag
XELAEV_18045674mg
See related
EnsemblRapid:ENSXLAG00005036394
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pelo; pelota
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Genomic context

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Location:
chromosome: 9_10L
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (125367634..125385631, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (114646506..114664503, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene progestin and adipoQ receptor family member IV L homeolog Neighboring gene kringle containing transmembrane protein 2 L homeolog Neighboring gene claudin 6, gene 2 L homeolog Neighboring gene claudin 6, gene 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables ribosome binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA surveillance IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cell division IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within nonfunctional rRNA decay IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within nuclear-transcribed mRNA catabolic process, no-go decay IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within nuclear-transcribed mRNA catabolic process, no-go decay ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within nuclear-transcribed mRNA catabolic process, non-stop decay IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within rescue of stalled ribosome ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within ribosome disassembly IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ribosome disassembly ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
part_of Dom34-Hbs1 complex ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein pelota homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095017.2 → NP_001088486.1  protein pelota homolog

    See identical proteins and their annotated locations for NP_001088486.1

    Status: PROVISIONAL

    Source sequence(s)
    BC084817
    UniProtKB/Swiss-Prot
    Q5U567
    UniProtKB/TrEMBL
    A0A974C224
    Related
    ENSXLAP00005108910.1, ENSXLAT00005111074.1
    Conserved Domains (4) summary
    COG1537
    Location:1 → 370
    PelA; Stalled ribosome rescue protein Dom34, pelota family [Translation, ribosomal structure and biogenesis]
    pfam03463
    Location:1 → 128
    eRF1_1; eRF1 domain 1
    pfam03464
    Location:136 → 268
    eRF1_2; eRF1 domain 2
    pfam03465
    Location:274 → 370
    eRF1_3; eRF1 domain 3

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    125367634..125385631 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5U567.1 GenPept UniProtKB/Swiss-Prot:Q5U567

Gene LinkOut

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