vsnl1.S visinin like 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: vsnl1.S
Official Full Name: visinin like 1 S homeolog
Primary source: Xenbase:XB-GENE-952051
Locus tag: XELAEV_18030105mg
See related: EnsemblRapid:ENSXLAG00005018379 AllianceGenome:Xenbase:XB-GENE-952051
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: hlp3; vilip; vsnl1; hpcal3; huvisl1; vilip-1; vsnl1-a; vsnl1-b; vsnl1.L
Summary: Predicted to enable calcium ion binding activity. Orthologous to human VSNL1 (visinin like 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 5S

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	5S	NC_054380.1 (129257363..129356523)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	5S	NC_030733.1 (122532405..122631727)

Chromosome 5S - NC_054380.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

D6Rat38 (e-PCR), detects polymorphism
- UniSTS:228066

Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: visinin like 1 S homeolog

Names: visinin like 1 L homeolog; visinin-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001095006.1 → NP_001088475.1 visinin like 1 S homeolog

See identical proteins and their annotated locations for NP_001088475.1

Status: PROVISIONAL

Source sequence(s)

BC084802

UniProtKB/TrEMBL

A0A974HID3, Q5U582

Related

ENSXLAP00005054312.1, ENSXLAT00005055486.1

Conserved Domains (2) summary

COG5126
Location:15 → 181

FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

cd00051
Location:65 → 125

EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...