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pdcd5.S programmed cell death 5 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495300, updated on 17-Aug-2024

Summary

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Official Symbol
pdcd5.S
Official Full Name
programmed cell death 5 S homeolog
Primary source
Xenbase:XB-GENE-6253981
Locus tag
XELAEV_18024954mg
See related
EnsemblRapid:ENSXLAG00005018541
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pdcd5
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Genomic context

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Location:
chromosome: 4S
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (51199393..51214229, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (45146417..45161285, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene CBY1-interacting BAR domain-containing protein 2-like Neighboring gene protein kinase C delta type-like Neighboring gene probable C-mannosyltransferase DPY19L3 Neighboring gene uncharacterized LOC108715445

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
programmed cell death 5 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094967.2 → NP_001088436.1  programmed cell death 5 S homeolog

    See identical proteins and their annotated locations for NP_001088436.1

    Status: PROVISIONAL

    Source sequence(s)
    BC084757
    UniProtKB/TrEMBL
    A0A974CYM4, Q5U5C7
    Related
    ENSXLAP00005054780.1, ENSXLAT00005055968.1
    Conserved Domains (1) summary
    pfam01984
    Location:9 → 102
    dsDNA_bind; Double-stranded DNA-binding domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    51199393..51214229 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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