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acer3.S alkaline ceramidase 3 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495272, updated on 4-Nov-2024

Summary

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Official Symbol
acer3.S
Official Full Name
alkaline ceramidase 3 S homeolog
Primary source
Xenbase:XB-GENE-994453
Locus tag
XELAEV_18016390mg
See related
EnsemblRapid:ENSXLAG00005012420 AllianceGenome:Xenbase:XB-GENE-994453
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
phca; acer3
Summary
Predicted to enable N-acylsphingosine amidohydrolase activity. Predicted to act upstream of or within ceramide metabolic process; phytosphingosine biosynthetic process; and sphingosine biosynthetic process. Predicted to be located in membrane. Orthologous to human ACER3 (alkaline ceramidase 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See acer3.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (163633415..163680570, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (154253438..154268996, complement)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor 17 S homeolog Neighboring gene uncharacterized LOC121400728 Neighboring gene calpain 5 S homeolog Neighboring gene olfactory marker protein S homeolog Neighboring gene tsukushi, small leucine rich proteoglycan S homeolog Neighboring gene leucine rich repeat containing 32, gene 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables N-acylsphingosine amidohydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within ceramide metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within phytosphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sphingolipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
alkaline ceramidase 3 S homeolog
NP_001088415.1
XP_041439142.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094946.1 → NP_001088415.1  alkaline ceramidase 3 S homeolog

    See identical proteins and their annotated locations for NP_001088415.1

    Status: PROVISIONAL

    Source sequence(s)
    BC084392
    UniProtKB/TrEMBL
    A0A974DJT1, Q5XGP2
    Related
    ENSXLAP00005036501.1, ENSXLAT00005037410.1
    Conserved Domains (1) summary
    pfam05875
    Location:9 → 256
    Ceramidase; Ceramidase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    163633415..163680570 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041583208.1 → XP_041439142.1  alkaline ceramidase 3 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1MBR7
    Related
    ENSXLAP00005036461.1, ENSXLAT00005037370.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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