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ppib.S peptidylprolyl isomerase B S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495270, updated on 4-Nov-2024

Summary

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Official Symbol
ppib.S
Official Full Name
peptidylprolyl isomerase B S homeolog
Primary source
Xenbase:XB-GENE-17332304
Locus tag
XELAEV_18020744mg
See related
EnsemblRapid:ENSXLAG00005008569 AllianceGenome:Xenbase:XB-GENE-17332304
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
cypb; scylp; cyp-s1
Summary
Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to act upstream of or within protein folding and protein peptidyl-prolyl isomerization. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 9. Orthologous to human PPIB (peptidylprolyl isomerase B). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ppib.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (58942480..58945965, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (57541672..57545157, complement)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121402169 Neighboring gene sorting nexin 22 S homeolog Neighboring gene PCNA clamp associated factor S homeolog Neighboring gene casein kinase 1 gamma 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein folding IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein peptidyl-prolyl isomerization IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC495270
Names
cyclophilin B
peptidylprolyl isomerase B (cyclophilin B) S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094944.2 → NP_001088413.1  uncharacterized protein LOC495270

    See identical proteins and their annotated locations for NP_001088413.1

    Status: PREDICTED

    Source sequence(s)
    BC084369
    UniProtKB/TrEMBL
    A0A974DAA2, Q5XGR3
    Related
    ENSXLAP00005024788.1, ENSXLAT00005025498.1
    Conserved Domains (1) summary
    cd01926
    Location:45 → 203
    cyclophilin_ABH_like; cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    58942480..58945965 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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