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rbm12b.S RNA binding motif protein 12B gene 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495241, updated on 17-Aug-2024

Summary

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Official Symbol
rbm12b.S
Official Full Name
RNA binding motif protein 12B gene 1 S homeolog
Primary source
Xenbase:XB-GENE-22063329
Locus tag
XELAEV_18033871mg
See related
EnsemblRapid:ENSXLAG00005004544
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rbm12b.1; rbm12b.1.S
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Genomic context

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See rbm12b.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (113558365..113564373, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (104903101..104908945, complement)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene fucolectin-3-like Neighboring gene RNA binding motif protein 12B gene 3 S homeolog Neighboring gene RNA-binding protein 12B-like Neighboring gene transmembrane protein 67 S homeolog Neighboring gene GTP binding protein overexpressed in skeletal muscle S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC495241

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094919.1 → NP_001088388.1  uncharacterized protein LOC495241

    See identical proteins and their annotated locations for NP_001088388.1

    Status: PREDICTED

    Source sequence(s)
    BC084663
    UniProtKB/TrEMBL
    A0A974HED4, Q5XG08
    Related
    ENSXLAP00005013604.1, ENSXLAT00005013786.1
    Conserved Domains (2) summary
    COG0724
    Location:321 → 402
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl17169
    Location:4 → 72
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    113558365..113564373 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018268771.2 → XP_018124260.1  uncharacterized protein LOC495241 isoform X1

    UniProtKB/TrEMBL
    A0A974HED4, Q5XG08
    Related
    ENSXLAP00005013602.1, ENSXLAT00005013784.1
Nucleotide Protein Strain
Heading Accession and Version

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