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XB5788060.L uncharacterized XB5788060 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495228, updated on 17-Aug-2024

Summary

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Symbol
XB5788060.L
Full Name
uncharacterized XB5788060 L homeolog
Primary source
Xenbase:XB-GENE-5788080
Locus tag
XELAEV_18043213mg
See related
EnsemblRapid:ENSXLAG00005029908
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
LOC100494818.L
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Genomic context

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See XB5788060.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (3212462..3220288, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (3180092..3187739, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene Sp6 transcription factor L homeolog Neighboring gene Sp2 transcription factor L homeolog Neighboring gene proline rich 15-like L homeolog Neighboring gene CDK5 regulatory subunit associated protein 3 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC495228

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094909.1 → NP_001088378.1  uncharacterized protein LOC495228

    See identical proteins and their annotated locations for NP_001088378.1

    Status: PREDICTED

    Source sequence(s)
    BC084643
    UniProtKB/TrEMBL
    Q5XG27
    Conserved Domains (2) summary
    smart01025
    Location:370 → 444
    BEN; The BEN domain is found in diverse animal proteins
    cl07863
    Location:127 → 182
    Phasin; Poly(hydroxyalcanoate) granule associated protein (phasin)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    3212462..3220288 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041575708.1 → XP_041431642.1  uncharacterized protein LOC495228 isoform X2

    UniProtKB/TrEMBL
    A0A1L8ES05, A0A974BWY3
    Conserved Domains (2) summary
    smart01025
    Location:370 → 444
    BEN; The BEN domain is found in diverse animal proteins
    cl21462
    Location:159 → 187
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  2. XM_018234528.2 → XP_018090017.1  uncharacterized protein LOC495228 isoform X1

    UniProtKB/TrEMBL
    A0A8J0TRL3
    Related
    ENSXLAP00005089421.1, ENSXLAT00005091090.1
Nucleotide Protein Strain
Heading Accession and Version

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