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npl.S N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase) S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495191, updated on 17-Aug-2024

Summary

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Official Symbol
npl.S
Official Full Name
N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase) S homeolog
Primary source
Xenbase:XB-GENE-6254295
Locus tag
XELAEV_18025338mg
See related
EnsemblRapid:ENSXLAG00005024797
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
npl; c112; npl1; npl-a; npl-b; dhdps1
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Genomic context

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Location:
chromosome: 4S
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (79789843..79805239, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (73592510..73607931, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene laminin subunit gamma 1 S homeolog Neighboring gene DEAH-box helicase 9 S homeolog Neighboring gene regulator of G-protein signaling 8 S homeolog Neighboring gene regulator of G-protein signaling 16 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables N-acetylneuraminate lyase activity IEA
Inferred from Electronic Annotation
more info
  
enables N-acetylneuraminate lyase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables lyase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within N-acetylneuraminate catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
N-acetylneuraminate lyase B
Names
N-acetylneuraminate pyruvate-lyase B
N-acetylneuraminic acid aldolase B
NALase B
n-acetylneuraminate lyase B
sialate lyase B
sialate-pyruvate lyase B
sialic acid aldolase B
sialic acid lyase B
XP_018115177.1
XP_018115178.1
XP_041417445.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    79789843..79805239 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018259689.2 → XP_018115178.1  N-acetylneuraminate lyase B

    UniProtKB/TrEMBL
    A0A1L8GG39, A0A974HLT5, A0A974HM89
    Conserved Domains (1) summary
    cl21457
    Location:8 → 283
    TIM; TIM-like beta/alpha barrel domains

  2. XM_018259688.2 → XP_018115177.1  N-acetylneuraminate lyase B

    UniProtKB/TrEMBL
    A0A1L8GG39, A0A974HLT5, A0A974HM89
    Conserved Domains (1) summary
    cl21457
    Location:8 → 283
    TIM; TIM-like beta/alpha barrel domains

  3. XM_041561511.1 → XP_041417445.1  N-acetylneuraminate lyase B

    UniProtKB/TrEMBL
    A0A1L8GG39, A0A974HLT5, A0A974HM89
    Related
    ENSXLAP00005073497.1, ENSXLAT00005075063.1
    Conserved Domains (1) summary
    cl21457
    Location:8 → 283
    TIM; TIM-like beta/alpha barrel domains

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001094880.1: Suppressed sequence

    Description
    NM_001094880.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5XGL8.1 GenPept UniProtKB/Swiss-Prot:Q5XGL8

Gene LinkOut

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