gtpbp1.S GTP binding protein 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: gtpbp1.S
Official Full Name: GTP binding protein 1 S homeolog
Primary source: Xenbase:XB-GENE-951188
Locus tag: XELAEV_18025663mg
See related: EnsemblRapid:ENSXLAG00005005697
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: gtpbp1
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Genomic context

Location:: chromosome: 4S

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	4S	NC_054378.1 (100547355..100574768)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	4S	NC_030731.1 (94225116..94252630)

Chromosome 4S - NC_054378.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables GTP binding	IEA Inferred from Electronic Annotation more info
enables GTPase activity	IEA Inferred from Electronic Annotation more info
enables GTPase activity	ISS Inferred from Sequence or Structural Similarity more info
enables translation elongation factor activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within GTP metabolic process	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within positive regulation of mRNA catabolic process	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within translational elongation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
part_of cytoplasmic exosome (RNase complex)	ISS Inferred from Sequence or Structural Similarity more info
located_in cytosol	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: GTP-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001094844.1 → NP_001088313.1 GTP-binding protein 1

See identical proteins and their annotated locations for NP_001088313.1

Status: PROVISIONAL

Source sequence(s)

BC084354

UniProtKB/Swiss-Prot

Q5XGS8

UniProtKB/TrEMBL

A0A974CZZ0

Related

ENSXLAP00005017037.1, ENSXLAT00005017333.1

Conserved Domains (4) summary

cd04165
Location:151 → 375

GTPBP1_like; GTP binding protein 1 (GTPBP1)-like family includes GTPBP2

COG5258
Location:65 → 563

GTPBP1; GTPase [General function prediction only]

cd03694
Location:384 → 470

GTPBP_II; Domain II of the GTPBP family of GTP binding proteins

cd03708
Location:476 → 562

GTPBP_III; Domain III of the GP-1 family of GTPases