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psmd6.S proteasome 26S subunit, non-ATPase 6 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495148, updated on 17-Aug-2024

Summary

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Official Symbol
psmd6.S
Official Full Name
proteasome 26S subunit, non-ATPase 6 S homeolog
Primary source
Xenbase:XB-GENE-17333132
Locus tag
XELAEV_18026021mg
See related
EnsemblRapid:ENSXLAG00005002997
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
s10; rpn7; psmd6; p44s10
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Genomic context

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Location:
chromosome: 4S
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (124410413..124418405)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (117982157..117990624)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 9 S homeolog Neighboring gene prickle planar cell polarity protein 2 S homeolog Neighboring gene ataxin 7 S homeolog Neighboring gene THO complex 7 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
part_of proteasome complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
proteasome 26S subunit, non-ATPase 6 S homeolog
Names
proteasome (prosome, macropain) 26S subunit, non-ATPase, 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094843.1 → NP_001088312.1  proteasome 26S subunit, non-ATPase 6 S homeolog

    See identical proteins and their annotated locations for NP_001088312.1

    Status: PROVISIONAL

    Source sequence(s)
    BC084351
    UniProtKB/TrEMBL
    Q5XGT1
    Related
    ENSXLAP00005009004.1, ENSXLAT00005009129.1
    Conserved Domains (3) summary
    COG5187
    Location:15 → 382
    RPN7; 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
    pfam01399
    Location:254 → 358
    PCI; PCI domain
    pfam10602
    Location:66 → 239
    RPN7; 26S proteasome subunit RPN7

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    124410413..124418405
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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