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tmem178a.S transmembrane protein 178A S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495141, updated on 17-Aug-2024

Summary

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Official Symbol
tmem178a.S
Official Full Name
transmembrane protein 178A S homeolog
Primary source
Xenbase:XB-GENE-942690
Locus tag
XELAEV_18028927mg
See related
EnsemblRapid:ENSXLAG00005005659
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
tmem178; tmem178a; tmem178.1; tmem178a.L
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Genomic context

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Location:
chromosome: 5S
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (33914514..33970994, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (33882657..33939048, complement)

Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene protein kinase C theta type-like Neighboring gene cAMP-dependent protein kinase type 1-like Neighboring gene mitogen-activated protein kinase kinase kinase kinase 3 S homeolog Neighboring gene U4atac minor spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of osteoclast differentiation ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane protein 178A
Names
transmembrane protein 178, gene 1
transmembrane protein 178A L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094836.1 → NP_001088305.1  transmembrane protein 178A precursor

    See identical proteins and their annotated locations for NP_001088305.1

    Status: PROVISIONAL

    Source sequence(s)
    BC084338
    UniProtKB/Swiss-Prot
    Q5XGU1
    UniProtKB/TrEMBL
    A0A974CQM8
    Related
    ENSXLAP00005016760.1, ENSXLAT00005017056.1
    Conserved Domains (1) summary
    cl21598
    Location:113 → 281
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    33914514..33970994 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5XGU1.1 GenPept UniProtKB/Swiss-Prot:Q5XGU1

Gene LinkOut

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