U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

chrnb2.S cholinergic receptor nicotinic beta 2 subunit S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495135, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
chrnb2.S
Official Full Name
cholinergic receptor nicotinic beta 2 subunit S homeolog
Primary source
Xenbase:XB-GENE-866544
Locus tag
XELAEV_18042913mg
See related
EnsemblRapid:ENSXLAG00005031368
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
chrnb2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See chrnb2.S in Genome Data Viewer
Location:
chromosome: 8S
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (101818798..101832499)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (96819793..96823630)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene toll-like receptor 2 Neighboring gene interleukin 6 receptor S homeolog Neighboring gene adenosine deaminase, RNA-specific S homeolog Neighboring gene uncharacterized LOC121397598 Neighboring gene potassium calcium-activated channel subfamily N member 3 S homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. α7β2 nicotinic acetylcholine receptors assemble, function, and are activated primarily via their α7-α7 interfaces. Murray TA, et al. Mol Pharmacol, 2012 Feb. PMID 22039094, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
  
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within nervous system process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
  
located_in synapse IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
cholinergic receptor nicotinic beta 2 subunit S homeolog
Names
cholinergic receptor, nicotinic beta 2 S homeolog
cholinergic receptor, nicotinic, beta 2 (neuronal)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094830.1 → NP_001088299.1  cholinergic receptor nicotinic beta 2 subunit S homeolog precursor

    See identical proteins and their annotated locations for NP_001088299.1

    Status: PROVISIONAL

    Source sequence(s)
    BC084330
    UniProtKB/TrEMBL
    A0A974H6Z7, Q5XGU9
    Related
    ENSXLAP00005094292.1, ENSXLAT00005095993.1
    Conserved Domains (3) summary
    TIGR00860
    Location:28 → 478
    LIC; Cation transporter family protein
    pfam02931
    Location:28 → 233
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:240 → 477
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    101818798..101832499
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials