trim24.S tripartite motif containing 24 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: trim24.S
Official Full Name: tripartite motif containing 24 S homeolog
Primary source: Xenbase:XB-GENE-6254312
Locus tag: XELAEV_18019830mg
See related: AllianceGenome:Xenbase:XB-GENE-6254312
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: ptc6; tf1a; tif1; rnf82; tif1a; trim24; tif1alpha
Summary: Predicted to enable zinc ion binding activity. Predicted to be located in cytoplasm. Orthologous to human TRIM24 (tripartite motif containing 24). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information: Annotation category: partial on reference assembly
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Genomic context

Location:: chromosome: 3S

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	3S	NC_054376.1 (4563962..4619593)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	3S	NC_030729.1 (4574454..4630683)

Chromosome 3S - NC_054376.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: tripartite motif containing 24 S homeolog

Names: tripartite motif-containing 24

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001094825.1 → NP_001088294.1 tripartite motif containing 24 S homeolog

See identical proteins and their annotated locations for NP_001088294.1

Status: PROVISIONAL

Source sequence(s)

BC084322

UniProtKB/TrEMBL

Q5XGV6

Conserved Domains (3) summary

smart00502
Location:244 → 370

BBC; B-Box C-terminal domain

smart00336
Location:138 → 173

BBOX; B-Box-type zinc finger

cd00021
Location:199 → 237

BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.