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znf569.L zinc finger protein 569 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495109, updated on 4-Nov-2024

Summary

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Official Symbol
znf569.L
Official Full Name
zinc finger protein 569 L homeolog
Primary source
Xenbase:XB-GENE-6034006
Locus tag
XELAEV_18030492mg
See related
EnsemblRapid:ENSXLAG00005036157 AllianceGenome:Xenbase:XB-GENE-6034006
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
znf569
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and metal ion binding activity. Predicted to act upstream of or within regulation of DNA-templated transcription. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See znf569.L in Genome Data Viewer
Location:
chromosome: 6L
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (5016372..5021357, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (2598071..2602973, complement)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108718456 Neighboring gene uncharacterized LOC108718650 Neighboring gene ring finger protein 121 L homeolog Neighboring gene uncharacterized XB22065625 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC132272

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 569 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094807.1 → NP_001088276.1  zinc finger protein 569 L homeolog

    See identical proteins and their annotated locations for NP_001088276.1

    Status: PROVISIONAL

    Source sequence(s)
    BC108843
    UniProtKB/TrEMBL
    A0A974CLL0, Q32N45
    Conserved Domains (3) summary
    COG5048
    Location:105 → 386
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:516 → 536
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:341 → 366
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    5016372..5021357 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041565537.1 → XP_041421471.1  zinc finger protein 569 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1KVZ1, A0A974CLL0
    Conserved Domains (2) summary
    COG5048
    Location:162 → 467
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:597 → 617
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_041565538.1 → XP_041421472.1  zinc finger protein 569 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1KXL0, A0A974CLL0
    Related
    ENSXLAP00005108109.1, ENSXLAT00005110259.1
    Conserved Domains (2) summary
    COG5048
    Location:152 → 457
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:587 → 607
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_041565539.1 → XP_041421473.1  zinc finger protein 569 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1KXL0, A0A974CLL0
    Related
    ENSXLAP00005108124.1, ENSXLAT00005110274.1
    Conserved Domains (2) summary
    COG5048
    Location:152 → 457
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:587 → 607
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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