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stimate.S STIM activating enhancer S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495070, updated on 4-Nov-2024

Summary

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Official Symbol
stimate.S
Official Full Name
STIM activating enhancer S homeolog
Primary source
Xenbase:XB-GENE-5830267
Locus tag
XELAEV_18025731mg
See related
EnsemblRapid:ENSXLAG00005016629 AllianceGenome:Xenbase:XB-GENE-5830267
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
tmem110; mem110.2; tmem110.2; tmem110.S
Summary
Predicted to enable calcium channel regulator activity. Predicted to act upstream of or within activation of store-operated calcium channel activity. Predicted to be located in cortical endoplasmic reticulum and membrane. Orthologous to human STIMATE (STIM activating enhancer). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See stimate.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (102804071..102831988, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (96471510..96499436, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene calcium channel, voltage-dependent, gamma subunit 2 S homeolog Neighboring gene eukaryotic translation initiation factor 3 subunit D S homeolog Neighboring gene Scm like with four mbt domains 1 S homeolog Neighboring gene protein RFT1 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables calcium channel regulator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within activation of store-operated calcium channel activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cortical endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
STIM activating enhancer S homeolog; store-operated calcium entry regulator STIMATE
Names
transmembrane protein 110 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    102804071..102831988 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018259681.2 → XP_018115170.1  store-operated calcium entry regulator STIMATE

    UniProtKB/TrEMBL
    A0A1L8GH82, A0A974D4Y7, A0A974HM73
    Related
    ENSXLAP00005048966.1, ENSXLAT00005050103.1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001094770.1: Suppressed sequence

    Description
    NM_001094770.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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