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riok2.S RIO kinase 2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495048, updated on 4-Nov-2024

Summary

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Official Symbol
riok2.S
Official Full Name
RIO kinase 2 S homeolog
Primary source
Xenbase:XB-GENE-6254535
Locus tag
XELAEV_18010803mg
See related
EnsemblRapid:ENSXLAG00005025716 AllianceGenome:Xenbase:XB-GENE-6254535
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rio2; riok2b; riok2-a; riok2-b
Summary
Predicted to enable ATP binding activity; histone H2AS1 kinase activity; and metal ion binding activity. Predicted to act upstream of or within maturation of SSU-rRNA and protein phosphorylation. Predicted to be located in cytosol and nucleus. Predicted to be part of preribosome, small subunit precursor. Orthologous to human RIOK2 (RIO kinase 2). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See riok2.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (164705299..164721814)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (148701103..148717618)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene chromodomain helicase DNA binding protein 1 S homeolog Neighboring gene repulsive guidance molecule BMP co-receptor b S homeolog Neighboring gene limb and CNS expressed 1 S homeolog Neighboring gene leucyl/cystinyl aminopeptidase S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables histone H2AS1 kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within phosphorylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein phosphorylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of preribosome, small subunit precursor IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RIO kinase 2 S homeolog
NP_001088220.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094751.1 → NP_001088220.1  RIO kinase 2 S homeolog

    See identical proteins and their annotated locations for NP_001088220.1

    Status: PROVISIONAL

    Source sequence(s)
    BC084165
    UniProtKB/TrEMBL
    A0A974DUW1, Q5XHA7
    Related
    ENSXLAP00005076531.1, ENSXLAT00005078122.1
    Conserved Domains (3) summary
    COG0478
    Location:3 → 312
    RIO2; RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
    cd05144
    Location:94 → 276
    RIO2_C; C-terminal catalytic domain of the atypical protein serine kinase, RIO2 kinase
    pfam09202
    Location:9 → 91
    Rio2_N; Rio2, N-terminal

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    164705299..164721814
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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