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uchl3.L ubiquitin C-terminal hydrolase L3 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495025, updated on 4-Nov-2024

Summary

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Official Symbol
uchl3.L
Official Full Name
ubiquitin C-terminal hydrolase L3 L homeolog
Primary source
Xenbase:XB-GENE-980865
Locus tag
XELAEV_18013195mg
See related
EnsemblRapid:ENSXLAG00005000507 AllianceGenome:Xenbase:XB-GENE-980865
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
uchl3
Summary
Predicted to enable cysteine-type deubiquitinase activity. Predicted to act upstream of or within protein deubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Orthologous to human UCHL3 (ubiquitin C-terminal hydrolase L3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See uchl3.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (132261366..132299398, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (126383798..126422049, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene potassium channel tetramerization domain containing 12 L homeolog Neighboring gene LIM domain 7 protein L homeolog Neighboring gene COMM domain containing 6 L homeolog Neighboring gene TBC1 domain family member 4 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
  
enables cysteine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein deubiquitination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ubiquitin C-terminal hydrolase L3 L homeolog
Names
ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)
NP_001088200.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094731.1 → NP_001088200.1  ubiquitin C-terminal hydrolase L3 L homeolog

    See identical proteins and their annotated locations for NP_001088200.1

    Status: PROVISIONAL

    Source sequence(s)
    BC084116
    UniProtKB/TrEMBL
    A0A974HYX5, Q5XHE2
    Related
    ENSXLAP00005001424.1, ENSXLAT00005001464.1
    Conserved Domains (1) summary
    cd09616
    Location:6 → 227
    Peptidase_C12_UCH_L1_L3; Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families L1 and L3

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    132261366..132299398 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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