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msantd4.L Myb/SANT DNA binding domain containing 4 with coiled-coils L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495021, updated on 4-Nov-2024

Summary

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Official Symbol
msantd4.L
Official Full Name
Myb/SANT DNA binding domain containing 4 with coiled-coils L homeolog
Primary source
Xenbase:XB-GENE-17336223
Locus tag
XELAEV_18003290mg
See related
EnsemblRapid:ENSXLAG00005000667 AllianceGenome:Xenbase:XB-GENE-17336223
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
BC014729
Summary
Orthologous to human MSANTD4 (Myb/SANT DNA binding domain containing 4 with coiled-coils). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See msantd4.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (170041381..170057367, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694836.1 (387740..401087, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene platelet derived growth factor D L homeolog Neighboring gene glutamate receptor, ionotropic, AMPA 4 L homeolog Neighboring gene kelch repeat and BTB (POZ) domain containing 3 L homeolog Neighboring gene guanylate cyclase 1, soluble, alpha 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
Myb/SANT-like DNA-binding domain-containing protein 4-like; uncharacterized protein LOC495021
Names
Myb/SANT-like DNA-binding domain containing 4 with coiled-coils L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094727.1 → NP_001088196.1  Myb/SANT-like DNA-binding domain-containing protein 4-like

    See identical proteins and their annotated locations for NP_001088196.1

    Status: PROVISIONAL

    Source sequence(s)
    BC084111
    UniProtKB/TrEMBL
    Q5XHE6
    Related
    ENSXLAP00005001916.1, ENSXLAT00005001962.1
    Conserved Domains (2) summary
    pfam13873
    Location:8 → 83
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
    cl19107
    Location:264 → 370
    SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    170041381..170057367 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041581057.1 → XP_041436991.1  uncharacterized protein LOC495021 isoform X1

    UniProtKB/TrEMBL
    A0A8J1M6Q0
    Conserved Domains (1) summary
    PTZ00266
    Location:255 → 334
    PTZ00266; NIMA-related protein kinase; Provisional

  2. XM_041581056.1 → XP_041436990.1  uncharacterized protein LOC495021 isoform X1

    UniProtKB/TrEMBL
    A0A8J1M6Q0
    Related
    ENSXLAP00005001919.1, ENSXLAT00005001965.1
    Conserved Domains (1) summary
    PTZ00266
    Location:255 → 334
    PTZ00266; NIMA-related protein kinase; Provisional

  3. XM_041581058.1 → XP_041436992.1  uncharacterized protein LOC495021 isoform X2

    UniProtKB/TrEMBL
    A0A8J1M5M2
    Related
    ENSXLAP00005001917.1, ENSXLAT00005001963.1
    Conserved Domains (2) summary
    PTZ00266
    Location:229 → 308
    PTZ00266; NIMA-related protein kinase; Provisional
    pfam13873
    Location:8 → 85
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
Nucleotide Protein Strain
Heading Accession and Version

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