nid2.L nidogen 2 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: nid2.L
Official Full Name: nidogen 2 L homeolog
Primary source: Xenbase:XB-GENE-967335
Locus tag: XELAEV_18039667mg
See related: EnsemblRapid:ENSXLAG00005019440
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: nid1; nid2; nid-2; nidogen-2
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Genomic context

Location:: chromosome: 8L

Exon count:: 23

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	8L	NC_054385.1 (86712601..86753136)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	8L	NC_030738.1 (72032357..72073055)

Chromosome 8L - NC_054385.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell adhesion	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within cell-matrix adhesion	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in basement membrane	IEA Inferred from Electronic Annotation more info
located_in extracellular region	IEA Inferred from Electronic Annotation more info
located_in extracellular space	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: nidogen 2 L homeolog

Names: nidogen 1; nidogen 2 (osteonidogen); osteonidogen

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001094709.1 → NP_001088178.1 nidogen 2 L homeolog precursor

See identical proteins and their annotated locations for NP_001088178.1

Status: PROVISIONAL

Source sequence(s)

BC084089

UniProtKB/TrEMBL

A0A974C886, Q5XHG8

Related

ENSXLAP00005057094.1, ENSXLAT00005058441.1

Conserved Domains (6) summary

smart00135
Location:1333 → 1375

LY; Low-density lipoprotein-receptor YWTD domain

smart00539
Location:99 → 257

NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins

cd00255
Location:516 → 739

nidG2; Nidogen, G2 domain; Nidogen is an important component of the basement membrane, an extracellular sheet-like matrix. Nidogen is a multifunctional protein that interacts with many other basement membrane proteins, like collagen, perlecan, lamin, and has a ...

pfam00086
Location:1092 → 1161

Thyroglobulin_1; Thyroglobulin type-1 repeat

pfam07645
Location:791 → 832

EGF_CA; Calcium-binding EGF domain

pfam12947
Location:884 → 917

EGF_3; EGF domain