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ttc39b.L tetratricopeptide repeat domain 39B L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 494994, updated on 4-Nov-2024

Summary

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Official Symbol
ttc39b.L
Official Full Name
tetratricopeptide repeat domain 39B L homeolog
Primary source
Xenbase:XB-GENE-1016441
Locus tag
XELAEV_18006797mg
See related
EnsemblRapid:ENSXLAG00005005571 AllianceGenome:Xenbase:XB-GENE-1016441
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ttc39b
Summary
Predicted to act upstream of or within lipid metabolic process. Orthologous to human TTC39B (tetratricopeptide repeat domain 39B). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ttc39b.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
20
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (134166395..134216326)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (121866411..121916202)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene PC4 and SFRS1 interacting protein 1 L homeolog Neighboring gene small nuclear RNA activating complex polypeptide 3 L homeolog Neighboring gene FRAS1 related extracellular matrix 1 L homeolog Neighboring gene cerberus 1, DAN family BMP antagonist L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tetratricopeptide repeat protein 39B
Names
TPR repeat protein 39B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094701.1 → NP_001088170.1  tetratricopeptide repeat protein 39B

    See identical proteins and their annotated locations for NP_001088170.1

    Status: PROVISIONAL

    Source sequence(s)
    BC084078
    UniProtKB/Swiss-Prot
    Q5XHH9
    UniProtKB/TrEMBL
    A0A974DTX9, A0A974I431
    Related
    ENSXLAP00005016443.1, ENSXLAT00005016739.1
    Conserved Domains (3) summary
    sd00006
    Location:482 → 512
    TPR; TPR repeat [structural motif]
    pfam10300
    Location:40 → 496
    DUF3808; Protein of unknown function (DUF3808)
    pfam13424
    Location:481 → 550
    TPR_12; Tetratricopeptide repeat

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    134166395..134216326
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041581856.1 → XP_041437790.1  tetratricopeptide repeat protein 39B isoform X1

    UniProtKB/TrEMBL
    A0A8J1M9Q2, A0A974DTX9
    Conserved Domains (2) summary
    sd00006
    Location:455 → 485
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:454 → 523
    TPR_12; Tetratricopeptide repeat
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5XHH9.1 GenPept UniProtKB/Swiss-Prot:Q5XHH9

Gene LinkOut

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