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retsat.L retinol saturase (all-trans-retinol 13,14-reductase) L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 494824, updated on 4-Nov-2024

Summary

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Official Symbol
retsat.L
Official Full Name
retinol saturase (all-trans-retinol 13,14-reductase) L homeolog
Primary source
Xenbase:XB-GENE-5949705
Locus tag
XELAEV_18018653mg
See related
EnsemblRapid:ENSXLAG00005002810 AllianceGenome:Xenbase:XB-GENE-5949705
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
retsat
Summary
Orthologous to human RETSAT (retinol saturase). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See retsat.L in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (134882322..134905079, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (119544492..119567386, complement)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene trans-Golgi network integral membrane protein 1 Neighboring gene provisional ortholog of caspase 7 L homeolog Neighboring gene STAM binding protein L homeolog Neighboring gene U2 spliceosomal RNA Neighboring gene indoleamine 2,3-dioxygenase 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
retinol saturase (all-trans-retinol 13,14-reductase) L homeolog
Names
all-trans-retinol 13,14-reductase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001122880.1 → NP_001116352.1  retinol saturase (all-trans-retinol 13,14-reductase) L homeolog precursor

    See identical proteins and their annotated locations for NP_001116352.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124859
    UniProtKB/TrEMBL
    Q08B66
    Related
    ENSXLAP00005008357.1, ENSXLAT00005008483.1
    Conserved Domains (2) summary
    COG1233
    Location:70 → 596
    COG1233; Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism]
    cl21454
    Location:76 → 564
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    134882322..134905079 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041585186.1 → XP_041441120.1  retinol saturase (all-trans-retinol 13,14-reductase) L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8H1S0, A0A974DDG8
    Conserved Domains (1) summary
    COG1233
    Location:70 → 596
    COG1233; Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism]

  2. XM_041585188.1 → XP_041441122.1  retinol saturase (all-trans-retinol 13,14-reductase) L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8H1S0, A0A974DDG8
    Conserved Domains (1) summary
    COG1233
    Location:70 → 596
    COG1233; Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism]

  3. XM_041585187.1 → XP_041441121.1  retinol saturase (all-trans-retinol 13,14-reductase) L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8H1S0, A0A974DDG8
    Conserved Domains (1) summary
    COG1233
    Location:70 → 596
    COG1233; Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism]

  4. XM_018251114.2 → XP_018106603.1  retinol saturase (all-trans-retinol 13,14-reductase) L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8H1S0, A0A974DDG8
    Conserved Domains (1) summary
    COG1233
    Location:70 → 596
    COG1233; Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism]

  5. XM_018251113.2 → XP_018106602.1  retinol saturase (all-trans-retinol 13,14-reductase) L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8H1S0, A0A974DDG8
    Conserved Domains (1) summary
    COG1233
    Location:70 → 596
    COG1233; Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism]

  6. XM_041585185.1 → XP_041441119.1  retinol saturase (all-trans-retinol 13,14-reductase) L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8H1S0, A0A974DDG8
    Conserved Domains (1) summary
    COG1233
    Location:70 → 596
    COG1233; Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism]
Nucleotide Protein Strain
Heading Accession and Version

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