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nploc4.L NPL4 homolog, ubiquitin recognition factor L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 494816, updated on 17-Aug-2024

Summary

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Official Symbol
nploc4.L
Official Full Name
NPL4 homolog, ubiquitin recognition factor L homeolog
Primary source
Xenbase:XB-GENE-17340512
Locus tag
XELAEV_18043691mg
See related
EnsemblRapid:ENSXLAG00005030437
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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Location:
chromosome: 9_10L
Exon count:
18
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (25201401..25292813, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (20202418..20294294, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH-type with G patch domain-containing protein-like Neighboring gene uncharacterized LOC108700980 Neighboring gene chromobox 8 L homeolog Neighboring gene uncharacterized LOC121397943

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC494816

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094645.1 → NP_001088114.1  uncharacterized protein LOC494816

    See identical proteins and their annotated locations for NP_001088114.1

    Status: PREDICTED

    Source sequence(s)
    BC082846
    UniProtKB/TrEMBL
    A0A974BXS9, Q63ZR4
    Related
    ENSXLAP00005091532.1, ENSXLAT00005093212.1
    Conserved Domains (5) summary
    COG5100
    Location:5 → 562
    NPL4; Nuclear pore protein [Nuclear structure]
    sd00029
    Location:586 → 605
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam05020
    Location:107 → 247
    zf-NPL4; NPL4 family, putative zinc binding region
    pfam05021
    Location:250 → 558
    NPL4; NPL4 family
    pfam11543
    Location:1 → 80
    UN_NPL4; Nuclear pore localization protein NPL4

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    25201401..25292813 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018234516.2 → XP_018090005.1  uncharacterized protein LOC494816 isoform X1

    UniProtKB/TrEMBL
    A0A8J0TSD1, A0A974BXS9
    Related
    ENSXLAP00005091623.1, ENSXLAT00005093303.1
Nucleotide Protein Strain
Heading Accession and Version

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